Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RECQL5ATP-dependent DNA helicase Q5 isoform X5. (1036 aa)    
Predicted Functional Partners:
RPRD1B
Regulation of nuclear pre-mRNA domain-containing protein 1B.
    
 0.980
POLR2G
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7.
    
 
 0.958
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
    
 
 0.958
POLR2M
RNA polymerase II subunit M.
    
  0.930
RPRD1A
Regulation of nuclear pre-mRNA domain-containing protein 1A.
    
 0.912
RAD51
DNA repair protein RAD51 homolog 1.
  
 0.891
ENSSCAP00000002502
annotation not available
   
 0.872
ENSSCAP00000023533
annotation not available
   
 0.872
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
   0.845
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 
 0.845
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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