STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAP30BPSAP30-binding protein isoform X1. (227 aa)    
Predicted Functional Partners:
PUF60
Poly(U)-binding-splicing factor PUF60 isoform X1.
   
   0.935
LOC103820800
Cyclin-dependent kinase 11B isoform X1.
   
   0.933
THOC1
THO complex subunit 1 isoform X1.
   
 
 0.860
CCNL1
Cyclin-L1.
    
   0.839
RBM17
Splicing factor 45 isoform X1.
   
   0.746
CCNL2
Cyclin-L2.
    
   0.738
DHX8
ATP-dependent RNA helicase DHX8/PRP22.
   
   0.705
CDK10
Cyclin-dependent kinase 10 isoform X2.
   
   0.686
SF3A2
Splicing factor 3a subunit 2.
   
   0.668
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
   
 0.638
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.