ENSSCAP00000001845 protein (Serinus canaria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSCAP00000001845

annotation not available (110 aa)

Predicted Functional Partners:

DGKE

0.596

ESR1

0.587

ESR2

0.572

PPT1

0.477

ZDHHC17

0.437

ZDHHC13

0.437

ZDHHC4

0.436

GCAT

0.432

ZDHHC1

0.425

GOLGA7B

0.422

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DGKE	ENSSCAP00000001845	ENSSCAP00000019861	ENSSCAP00000001845	Diacylglycerol kinase epsilon.	annotation not available	0.596
DGKE	ZDHHC13	ENSSCAP00000019861	ENSSCAP00000013385	Diacylglycerol kinase epsilon.	Palmitoyltransferase ZDHHC13 isoform X1.	0.555
DGKE	ZDHHC17	ENSSCAP00000019861	ENSSCAP00000011811	Diacylglycerol kinase epsilon.	Zinc finger DHHC-type containing 17.	0.555
ENSSCAP00000001845	DGKE	ENSSCAP00000001845	ENSSCAP00000019861	annotation not available	Diacylglycerol kinase epsilon.	0.596
ENSSCAP00000001845	ESR1	ENSSCAP00000001845	ENSSCAP00000015937	annotation not available	LOW QUALITY PROTEIN: estrogen receptor.	0.587
ENSSCAP00000001845	ESR2	ENSSCAP00000001845	ENSSCAP00000007987	annotation not available	Estrogen receptor beta isoform X1.	0.572
ENSSCAP00000001845	GCAT	ENSSCAP00000001845	ENSSCAP00000005336	annotation not available	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.	0.432
ENSSCAP00000001845	GOLGA7B	ENSSCAP00000001845	ENSSCAP00000023249	annotation not available	Golgin subfamily A member 7B.	0.422
ENSSCAP00000001845	PPT1	ENSSCAP00000001845	ENSSCAP00000008980	annotation not available	Palmitoyl-protein thioesterase 1.	0.477
ENSSCAP00000001845	ZDHHC1	ENSSCAP00000001845	ENSSCAP00000007500	annotation not available	Probable palmitoyltransferase ZDHHC1 isoform X1.	0.425
ENSSCAP00000001845	ZDHHC13	ENSSCAP00000001845	ENSSCAP00000013385	annotation not available	Palmitoyltransferase ZDHHC13 isoform X1.	0.437
ENSSCAP00000001845	ZDHHC17	ENSSCAP00000001845	ENSSCAP00000011811	annotation not available	Zinc finger DHHC-type containing 17.	0.437
ENSSCAP00000001845	ZDHHC4	ENSSCAP00000001845	ENSSCAP00000006829	annotation not available	Probable palmitoyltransferase ZDHHC4 isoform X4.	0.436
ESR1	ENSSCAP00000001845	ENSSCAP00000015937	ENSSCAP00000001845	LOW QUALITY PROTEIN: estrogen receptor.	annotation not available	0.587
ESR1	ESR2	ENSSCAP00000015937	ENSSCAP00000007987	LOW QUALITY PROTEIN: estrogen receptor.	Estrogen receptor beta isoform X1.	0.999
ESR2	ENSSCAP00000001845	ENSSCAP00000007987	ENSSCAP00000001845	Estrogen receptor beta isoform X1.	annotation not available	0.572
ESR2	ESR1	ENSSCAP00000007987	ENSSCAP00000015937	Estrogen receptor beta isoform X1.	LOW QUALITY PROTEIN: estrogen receptor.	0.999
GCAT	ENSSCAP00000001845	ENSSCAP00000005336	ENSSCAP00000001845	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial.	annotation not available	0.432
GOLGA7B	ENSSCAP00000001845	ENSSCAP00000023249	ENSSCAP00000001845	Golgin subfamily A member 7B.	annotation not available	0.422
GOLGA7B	ZDHHC1	ENSSCAP00000023249	ENSSCAP00000007500	Golgin subfamily A member 7B.	Probable palmitoyltransferase ZDHHC1 isoform X1.	0.533