STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FMODFibromodulin. (381 aa)    
Predicted Functional Partners:
TGFB2
Transforming growth factor beta-2 proprotein.
    
 0.937
TGFB3
Transforming growth factor beta-3 proprotein-like.
   
 0.936
OGN
Osteoglycin (osteoinductive factor, mimecan).
   
 
 0.752
TNMD
Tenomodulin isoform X1.
   
  
 0.697
NEB
Nebulin.
      
 0.680
LRR1
Leucine-rich repeat protein 1.
  
   
0.676
ASPN
Asporin.
  
 
0.662
LUM
Lumican.
   
 
 0.659
PRELP
Proline arginine-rich end leucine-rich repeat protein.
   
 
  0.652
OMD
Osteomodulin.
   
 
 0.594
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.