STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTC1Tetratricopeptide repeat protein 1. (288 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
    
 
 0.853
VAPB
VAMP associated protein B and C.
    
 
 0.685
LOC103824272
Aminoacylase-1 isoform X1.
    
   0.679
TOMM70
LOW QUALITY PROTEIN: mitochondrial import receptor subunit TOM70.
      
 0.567
OTULINL
Inactive ubiquitin thioesterase OTULINL isoform X1.
      
 0.556
C3orf14
Uncharacterized protein C3orf14 homolog.
      
 0.556
SPSB4
SPRY domain-containing SOCS box protein 1/4.
    
   0.531
SPSB1
SPRY domain-containing SOCS box protein 1/4.
    
   0.531
MRPL50
39S ribosomal protein L50, mitochondrial isoform X1.
      
 0.528
RTN4IP1
Reticulon-4-interacting protein 1, mitochondrial.
    
 
 0.509
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.