ENSSCAP00000001880 protein (Serinus canaria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSCAP00000001880

annotation not available (106 aa)

Predicted Functional Partners:

ZAP70

0.467

SYK

0.467

CD247

0.466

PTPN6

0.460

CD3E

0.445

LOC103822979

0.425

ALCAM

0.418

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALCAM	CD247	ENSSCAP00000023501	ENSSCAP00000016956	Activated leukocyte cell adhesion molecule.	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.413
ALCAM	ENSSCAP00000001880	ENSSCAP00000023501	ENSSCAP00000001880	Activated leukocyte cell adhesion molecule.	annotation not available	0.418
ALCAM	PTPN6	ENSSCAP00000023501	ENSSCAP00000020397	Activated leukocyte cell adhesion molecule.	Protein tyrosine phosphatase non-receptor type 6.	0.486
CD247	ALCAM	ENSSCAP00000016956	ENSSCAP00000023501	T-cell surface glycoprotein CD3 zeta chain isoform X1.	Activated leukocyte cell adhesion molecule.	0.413
CD247	CD3E	ENSSCAP00000016956	ENSSCAP00000007405	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD3 epsilon chain.	0.996
CD247	ENSSCAP00000001880	ENSSCAP00000016956	ENSSCAP00000001880	T-cell surface glycoprotein CD3 zeta chain isoform X1.	annotation not available	0.466
CD247	LOC103822979	ENSSCAP00000016956	ENSSCAP00000007411	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD3 gamma chain-like.	0.998
CD247	PTPN6	ENSSCAP00000016956	ENSSCAP00000020397	T-cell surface glycoprotein CD3 zeta chain isoform X1.	Protein tyrosine phosphatase non-receptor type 6.	0.799
CD247	SYK	ENSSCAP00000016956	ENSSCAP00000019209	T-cell surface glycoprotein CD3 zeta chain isoform X1.	Tyrosine-protein kinase SYK isoform X1.	0.957
CD247	ZAP70	ENSSCAP00000016956	ENSSCAP00000002761	T-cell surface glycoprotein CD3 zeta chain isoform X1.	Tyrosine-protein kinase ZAP-70 isoform X1.	0.997
CD3E	CD247	ENSSCAP00000007405	ENSSCAP00000016956	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.996
CD3E	ENSSCAP00000001880	ENSSCAP00000007405	ENSSCAP00000001880	T-cell surface glycoprotein CD3 epsilon chain.	annotation not available	0.445
CD3E	LOC103822979	ENSSCAP00000007405	ENSSCAP00000007411	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD3 gamma chain-like.	0.999
CD3E	PTPN6	ENSSCAP00000007405	ENSSCAP00000020397	T-cell surface glycoprotein CD3 epsilon chain.	Protein tyrosine phosphatase non-receptor type 6.	0.644
CD3E	SYK	ENSSCAP00000007405	ENSSCAP00000019209	T-cell surface glycoprotein CD3 epsilon chain.	Tyrosine-protein kinase SYK isoform X1.	0.958
CD3E	ZAP70	ENSSCAP00000007405	ENSSCAP00000002761	T-cell surface glycoprotein CD3 epsilon chain.	Tyrosine-protein kinase ZAP-70 isoform X1.	0.994
ENSSCAP00000001880	ALCAM	ENSSCAP00000001880	ENSSCAP00000023501	annotation not available	Activated leukocyte cell adhesion molecule.	0.418
ENSSCAP00000001880	CD247	ENSSCAP00000001880	ENSSCAP00000016956	annotation not available	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.466
ENSSCAP00000001880	CD3E	ENSSCAP00000001880	ENSSCAP00000007405	annotation not available	T-cell surface glycoprotein CD3 epsilon chain.	0.445
ENSSCAP00000001880	LOC103822979	ENSSCAP00000001880	ENSSCAP00000007411	annotation not available	T-cell surface glycoprotein CD3 gamma chain-like.	0.425