Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SF3A1Splicing factor 3A subunit 1. (779 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
   
 0.999
SF3A3
Splicing factor 3A subunit 3.
   
 0.998
SF3B2
Splicing factor 3B subunit 2.
   
 0.994
SNRPA1
U2 small nuclear ribonucleoprotein A.
   
 0.990
SF3B4
LOW QUALITY PROTEIN: splicing factor 3B subunit 4.
   
 0.990
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.989
SF3B3
Splicing factor 3B subunit 3.
   
 0.986
ENSSCAP00000002191
annotation not available
   
 0.985
DHX15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 0.984
SF3B5
Splicing factor 3B subunit 5.
    
 0.982
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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