STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GABARAPLOW QUALITY PROTEIN: gamma-aminobutyric acid receptor-associated protein. (87 aa)    
Predicted Functional Partners:
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.921
ATG7
Ubiquitin-like modifier-activating enzyme ATG7 isoform X2.
   
 0.906
ATG3
Ubiquitin-like-conjugating enzyme ATG3.
   
 0.882
ATG4B
Cysteine protease ATG4B.
   
 0.856
ATG4A
Cysteine protease ATG4A.
   
 0.856
ATG4C
Cysteine protease ATG4C.
   
 0.836
ATG12
Ubiquitin-like protein ATG12.
   
 0.834
ATG5
Autophagy protein 5 isoform X1.
    
 0.809
ULK1
Serine/threonine-protein kinase ULK1 isoform X4.
   
 0.767
ULK2
Serine/threonine-protein kinase ULK2.
   
 0.767
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.