ENSSCAP00000001966 protein (Serinus canaria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSCAP00000001966

annotation not available (126 aa)

Predicted Functional Partners:

DNAJB13

0.788

EFHB

0.766

EFHC2

0.752

EFCAB1

0.752

GCM2

0.725

SUPT4H1

0.698

HYOU1

0.688

ZNHIT3

0.686

C20orf85

0.683

LRRC34

0.682

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C20orf85	DNAJB13	ENSSCAP00000021370	ENSSCAP00000019180	Uncharacterized protein C20orf85 homolog.	DnaJ homolog subfamily B member 13.	0.555
C20orf85	EFCAB1	ENSSCAP00000021370	ENSSCAP00000016953	Uncharacterized protein C20orf85 homolog.	EF-hand calcium-binding domain-containing protein 1.	0.575
C20orf85	EFHB	ENSSCAP00000021370	ENSSCAP00000021110	Uncharacterized protein C20orf85 homolog.	EF-hand domain-containing family member B.	0.705
C20orf85	EFHC2	ENSSCAP00000021370	ENSSCAP00000015592	Uncharacterized protein C20orf85 homolog.	EF-hand domain-containing family member C2 isoform X1.	0.672
C20orf85	ENSSCAP00000001966	ENSSCAP00000021370	ENSSCAP00000001966	Uncharacterized protein C20orf85 homolog.	annotation not available	0.683
C20orf85	LRRC34	ENSSCAP00000021370	ENSSCAP00000013463	Uncharacterized protein C20orf85 homolog.	Leucine rich repeat containing 34.	0.555
DNAJB13	C20orf85	ENSSCAP00000019180	ENSSCAP00000021370	DnaJ homolog subfamily B member 13.	Uncharacterized protein C20orf85 homolog.	0.555
DNAJB13	EFCAB1	ENSSCAP00000019180	ENSSCAP00000016953	DnaJ homolog subfamily B member 13.	EF-hand calcium-binding domain-containing protein 1.	0.664
DNAJB13	EFHB	ENSSCAP00000019180	ENSSCAP00000021110	DnaJ homolog subfamily B member 13.	EF-hand domain-containing family member B.	0.721
DNAJB13	EFHC2	ENSSCAP00000019180	ENSSCAP00000015592	DnaJ homolog subfamily B member 13.	EF-hand domain-containing family member C2 isoform X1.	0.710
DNAJB13	ENSSCAP00000001966	ENSSCAP00000019180	ENSSCAP00000001966	DnaJ homolog subfamily B member 13.	annotation not available	0.788
DNAJB13	HYOU1	ENSSCAP00000019180	ENSSCAP00000023989	DnaJ homolog subfamily B member 13.	Hypoxia up-regulated protein 1.	0.546
DNAJB13	LRRC34	ENSSCAP00000019180	ENSSCAP00000013463	DnaJ homolog subfamily B member 13.	Leucine rich repeat containing 34.	0.669
EFCAB1	C20orf85	ENSSCAP00000016953	ENSSCAP00000021370	EF-hand calcium-binding domain-containing protein 1.	Uncharacterized protein C20orf85 homolog.	0.575
EFCAB1	DNAJB13	ENSSCAP00000016953	ENSSCAP00000019180	EF-hand calcium-binding domain-containing protein 1.	DnaJ homolog subfamily B member 13.	0.664
EFCAB1	EFHB	ENSSCAP00000016953	ENSSCAP00000021110	EF-hand calcium-binding domain-containing protein 1.	EF-hand domain-containing family member B.	0.897
EFCAB1	EFHC2	ENSSCAP00000016953	ENSSCAP00000015592	EF-hand calcium-binding domain-containing protein 1.	EF-hand domain-containing family member C2 isoform X1.	0.916
EFCAB1	ENSSCAP00000001966	ENSSCAP00000016953	ENSSCAP00000001966	EF-hand calcium-binding domain-containing protein 1.	annotation not available	0.752
EFCAB1	LRRC34	ENSSCAP00000016953	ENSSCAP00000013463	EF-hand calcium-binding domain-containing protein 1.	Leucine rich repeat containing 34.	0.677
EFHB	C20orf85	ENSSCAP00000021110	ENSSCAP00000021370	EF-hand domain-containing family member B.	Uncharacterized protein C20orf85 homolog.	0.705