STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UFL1E3 UFM1-protein ligase 1. (788 aa)    
Predicted Functional Partners:
DDRGK1
DDRGK domain containing 1.
    
 
 0.976
UFM1
Ubiquitin-fold modifier 1.
   
 
 0.923
UBA5
Ubiquitin-like modifier-activating enzyme 5.
   
 
 0.830
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.770
RPL26L1
Large subunit ribosomal protein L26e.
    
 
 0.738
UFSP2
Ufm1-specific protease 2.
   
  
 0.708
ENSSCAP00000007627
annotation not available
      
 0.703
LTN1
E3 ubiquitin-protein ligase listerin.
   
 0.703
EIF6
Eukaryotic translation initiation factor 6.
    
 
 0.684
RPL29
Large subunit ribosomal protein L29e.
    
 
 0.632
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.