STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000002009annotation not available (86 aa)    
Predicted Functional Partners:
ENSSCAP00000001790
annotation not available
    
 0.523
LPIN2
Phosphatidate phosphatase LPIN2 isoform X1.
    
 0.523
LPIN3
Phosphatidate phosphatase LPIN3 isoform X1.
    
 0.523
LPIN1
Phosphatidate phosphatase LPIN1 isoform X1.
    
 0.523
GTF2F2
General transcription factor IIF subunit 2.
    
 0.512
POLR2G
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7.
    
 0.510
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
    
 0.507
TIMM17A
Mitochondrial import inner membrane translocase subunit Tim17-A.
   
 0.498
TIMM21
Mitochondrial import inner membrane translocase subunit TIM21.
   
 0.481
POLR2J
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.473
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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