Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM108Transmembrane protein 108 isoform X3. (477 aa)    
Predicted Functional Partners:
SUSD5
Sushi domain-containing protein 5.
      
 0.886
ASTE1
Asteroid homolog 1.
      
 0.661
LOC103820858
Guanylin-like.
      
 0.615
CTXN1
Cortexin 1.
      
 0.599
CDV3
Protein CDV3 homolog isoform X1.
      
 0.571
SYNDIG1L
Synapse differentiation-inducing gene protein 1-like.
   
  
 0.534
LOC103818003
T-box-containing protein TBX6L.
      
 0.470
DYNC1H1
Cytoplasmic dynein 1 heavy chain 1.
      
 0.470
SYNDIG1
Synapse differentiation-inducing gene protein 1.
   
  
 0.450
ENSSCAP00000010721
annotation not available
      
 0.445
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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