STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F13A1Coagulation factor XIII A1 polypeptide. (735 aa)    
Predicted Functional Partners:
F13B
Coagulation factor XIII B polypeptide.
    
 0.896
F2
Coagulation factor II (thrombin).
    
 0.680
LOXHD1
LOW QUALITY PROTEIN: lipoxygenase homology domain-containing protein 1.
    
 
 0.614
EVPL
Envoplakin.
     
 0.568
PPL
Periplakin.
     
 0.568
PROC
Protein C, inactivator of coagulation factors Va and VIIIa.
    
 0.564
SERPIND1
Heparin cofactor II.
     
 0.558
FGA
Fibrinogen alpha chain.
   
 0.546
USH2A
Usherin.
     
 0.536
SLC26A5
Solute carrier family 26, member 5.
      
 0.528
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.