Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCBE1Collagen and calcium-binding EGF domain-containing protein 1 isoform X1. (355 aa)    
Predicted Functional Partners:
VEGFC
Vascular endothelial growth factor C isoform X1.
    
 0.856
PHF5A
PHD finger protein 5A.
      
 0.728
SUCLG2
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial.
      
 0.704
ADAMTS3
A disintegrin and metalloproteinase with thrombospondin motifs 3.
      
 0.606
SPECC1
Cytospin-B isoform X1.
      
 0.595
FLT4
Vascular endothelial growth factor receptor 3 isoform X1.
  
   
 0.578
EVPL
Envoplakin.
     
 0.545
PPL
Periplakin.
     
 0.545
FOXC1
LOW QUALITY PROTEIN: forkhead box protein C1.
     
 0.538
FOXC2
LOW QUALITY PROTEIN: forkhead box protein C2.
     
 0.538
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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