Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
POLR2GLOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7. (41 aa)    
Predicted Functional Partners:
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.999
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.999
POLR2I
DNA-directed RNA polymerase II subunit RPB9 isoform X1.
   
 0.998
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
   
 0.998
POLR2H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1.
   
 0.998
POLR2L
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.998
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
    
 0.998
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.997
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.997
POLR2J
DNA-directed RNA polymerase II subunit RPB11-a.
   
 0.995
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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