STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYRM4LYR motif-containing protein 4. (64 aa)    
Predicted Functional Partners:
NFS1
Cysteine desulfurase, mitochondrial.
   
 0.999
FXN
LOW QUALITY PROTEIN: frataxin, mitochondrial.
    
 0.995
ISCU
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial.
    
 0.994
NDUFAB1
NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein.
    
 0.905
SCLY
Selenocysteine lyase isoform X1.
   
 0.876
PALB2
Partner and localizer of BRCA2 isoform X1.
    
 0.859
MRE11
Double-strand break repair protein MRE11 isoform X1.
    
 0.826
FDX1
Ferredoxin-1, mitochondrial.
   
 0.801
LOC103816417
Ferredoxin-2, mitochondrial.
   
 0.801
IBA57
Putative transferase CAF17, mitochondrial.
      
 0.683
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.