close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM27RNA binding motif protein 27. (1019 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1 domain-containing protein isoform X1.
   
 0.710
MTREX
Exosome RNA helicase MTR4 isoform X1.
   
 0.589
PABPN1
Polyadenylate-binding protein 2.
    
 0.572
PABPN1L
PABPN1 like, cytoplasmic.
    
 0.572
RNPS1
RNA-binding protein with serine-rich domain 1.
    
 0.505
DELE1
Death ligand signal enhancer.
      
 0.476
CLUH
Clustered mitochondria protein homolog isoform X2.
   
  
 0.476
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 0.423
TCERG1
Transcription elongation regulator 1.
   
  
 0.409
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.