Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PXDC1PX domain-containing protein 1. (231 aa)    
Predicted Functional Partners:
KLHL29
Kelch like family member 29.
      
 0.682
LIN7C
Protein lin-7 homolog C.
    
   0.571
LIN7A
Protein lin-7 homolog A isoform X2.
    
   0.571
RABGAP1L
Rab GTPase-activating protein 1-like isoform X3.
    
   0.534
RABGAP1
Rab GTPase-activating protein 1.
    
   0.534
DOK6
Docking protein 6.
      
 0.528
FAM135A
Protein FAM135A isoform X1.
      
 0.528
DOK5
Docking protein 5 isoform X3.
      
 0.528
DCP1B
MRNA-decapping enzyme 1B isoform X1.
      
 0.527
DOK4
Docking protein 4.
      
 0.491
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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