STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IRF4Interferon regulatory factor 4. (446 aa)    
Predicted Functional Partners:
BATF
ATF-like basic leucine zipper transcriptional factor.
   
 
 0.518
BCL6
B-cell lymphoma 6 protein.
    
 0.518
IRF1
Interferon regulatory factor 1.
   
0.489
MYD88
Myeloid differentiation primary response protein MyD88.
   
 0.465
SPI1
Transcription factor PU.1.
   
 
 0.462
PLXNB2
Plexin-B2.
     
 0.428
AICDA
Single-stranded DNA cytosine deaminase.
   
  
 0.422
SEMA4A
Semaphorin-4A isoform X2.
      
 0.420
STAT6
Signal transducer and activator of transcription 6 isoform X1.
   
 0.417
EP300
Histone acetyltransferase p300.
    
 0.406
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.