STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDHD1LOW QUALITY PROTEIN: phospholipase DDHD1. (254 aa)    
Predicted Functional Partners:
DDHD2
Phospholipase DDHD2.
   
 
0.676
SEC13
Protein transport protein SEC13.
    
 0.655
SEC23IP
SEC23-interacting protein.
   
 
0.608
SEC31A
Protein transport protein Sec31A isoform X1.
    
 0.591
SEC31B
SEC31 homolog B, COPII coat complex component.
    
 0.591
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
     
 0.576
TXNDC16
Thioredoxin domain-containing protein 16.
      
 0.542
SEC23A
Protein transport protein Sec23A.
   
 0.538
SEC23B
Protein transport protein Sec23B.
   
 0.538
STYX
Serine/threonine/tyrosine-interacting protein.
   
  
 0.523
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.