STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD3Methyl-CpG-binding domain protein 3 isoform X1. (290 aa)    
Predicted Functional Partners:
MTA1
Metastasis associated 1.
   
 0.955
MTA3
Metastasis-associated protein MTA3 isoform X5.
   
 0.955
GATAD2B
LOW QUALITY PROTEIN: transcriptional repressor p66-beta.
   
 0.950
RBBP4
Histone-binding protein RBBP4.
   
 0.935
RBBP7
Histone-binding protein RBBP7 isoform X2.
   
 0.933
CDK2AP1
Cyclin-dependent kinase 2-associated protein 1.
   
 0.920
CHD5
Chromodomain helicase DNA binding protein 5.
    
 0.917
ENSSCAP00000019384
annotation not available
    
 0.917
ENSSCAP00000003201
LOW QUALITY PROTEIN: transcriptional repressor p66-alpha.
   
 0.910
ENSSCAP00000005117
annotation not available
    
 0.876
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.