Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MYSM1 | UBA52 | ENSSCAP00000008625 | ENSSCAP00000016247 | Histone H2A deubiquitinase MYSM1. | Ubiquitin-large subunit ribosomal protein L40e. | 0.969 |
MYSM1 | UBB | ENSSCAP00000008625 | ENSSCAP00000014007 | Histone H2A deubiquitinase MYSM1. | Ubiquitin B. | 0.973 |
MYSM1 | UBC | ENSSCAP00000008625 | ENSSCAP00000014768 | Histone H2A deubiquitinase MYSM1. | Polyubiquitin-C. | 0.973 |
MYSM1 | USP4 | ENSSCAP00000008625 | ENSSCAP00000002540 | Histone H2A deubiquitinase MYSM1. | Ubiquitin carboxyl-terminal hydrolase 4 isoform X1. | 0.701 |
RNF123 | USP4 | ENSSCAP00000018207 | ENSSCAP00000002540 | Ring finger protein 123. | Ubiquitin carboxyl-terminal hydrolase 4 isoform X1. | 0.594 |
SART3 | USP4 | ENSSCAP00000009442 | ENSSCAP00000002540 | Squamous cell carcinoma antigen recognized by T-cells 3 isoform X1. | Ubiquitin carboxyl-terminal hydrolase 4 isoform X1. | 0.735 |
SMURF2 | TGFBR1 | ENSSCAP00000019325 | ENSSCAP00000021935 | E3 ubiquitin-protein ligase SMURF2. | TGF-beta receptor type-1 isoform X3. | 0.992 |
SMURF2 | TRAF6 | ENSSCAP00000019325 | ENSSCAP00000004444 | E3 ubiquitin-protein ligase SMURF2. | TNF receptor-associated factor 6. | 0.931 |
SMURF2 | UBA52 | ENSSCAP00000019325 | ENSSCAP00000016247 | E3 ubiquitin-protein ligase SMURF2. | Ubiquitin-large subunit ribosomal protein L40e. | 0.903 |
SMURF2 | UBB | ENSSCAP00000019325 | ENSSCAP00000014007 | E3 ubiquitin-protein ligase SMURF2. | Ubiquitin B. | 0.712 |
SMURF2 | UBC | ENSSCAP00000019325 | ENSSCAP00000014768 | E3 ubiquitin-protein ligase SMURF2. | Polyubiquitin-C. | 0.712 |
SMURF2 | USP4 | ENSSCAP00000019325 | ENSSCAP00000002540 | E3 ubiquitin-protein ligase SMURF2. | Ubiquitin carboxyl-terminal hydrolase 4 isoform X1. | 0.615 |
TGFBR1 | SMURF2 | ENSSCAP00000021935 | ENSSCAP00000019325 | TGF-beta receptor type-1 isoform X3. | E3 ubiquitin-protein ligase SMURF2. | 0.992 |
TGFBR1 | TRAF6 | ENSSCAP00000021935 | ENSSCAP00000004444 | TGF-beta receptor type-1 isoform X3. | TNF receptor-associated factor 6. | 0.820 |
TGFBR1 | UBA52 | ENSSCAP00000021935 | ENSSCAP00000016247 | TGF-beta receptor type-1 isoform X3. | Ubiquitin-large subunit ribosomal protein L40e. | 0.542 |
TGFBR1 | USP4 | ENSSCAP00000021935 | ENSSCAP00000002540 | TGF-beta receptor type-1 isoform X3. | Ubiquitin carboxyl-terminal hydrolase 4 isoform X1. | 0.611 |
TRAF6 | SMURF2 | ENSSCAP00000004444 | ENSSCAP00000019325 | TNF receptor-associated factor 6. | E3 ubiquitin-protein ligase SMURF2. | 0.931 |
TRAF6 | TGFBR1 | ENSSCAP00000004444 | ENSSCAP00000021935 | TNF receptor-associated factor 6. | TGF-beta receptor type-1 isoform X3. | 0.820 |
TRAF6 | UBA52 | ENSSCAP00000004444 | ENSSCAP00000016247 | TNF receptor-associated factor 6. | Ubiquitin-large subunit ribosomal protein L40e. | 0.930 |
TRAF6 | UBB | ENSSCAP00000004444 | ENSSCAP00000014007 | TNF receptor-associated factor 6. | Ubiquitin B. | 0.892 |
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