STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000002730annotation not available (75 aa)    
Predicted Functional Partners:
SRSF6
Splicing factor, arginine/serine-rich 4/5/6.
 
      0.786
CSTF3
Cleavage stimulation factor subunit 3.
   
 0.744
ALYREF
LOW QUALITY PROTEIN: THO complex subunit 4.
  
 0.744
PABPN1
Polyadenylate-binding protein 2.
  
 0.714
RBM25
RNA-binding protein 25 isoform X1.
   
 0.711
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.710
SNRPE
Small nuclear ribonucleoprotein E.
   
 0.706
NCBP1
Nuclear cap-binding protein subunit 1.
   
 0.702
SNRPD1
Small nuclear ribonucleoprotein Sm D1 isoform X1.
   
 0.701
SNRPF
Small nuclear ribonucleoprotein F.
   
 0.695
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.