STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXC6Homeobox C6. (289 aa)    
Predicted Functional Partners:
HOXB5
Homeobox protein HoxA/B/C5.
   
 
0.832
MEIS1
Homeobox protein Meis1 isoform X1.
   
 0.721
ENSSCAP00000000588
annotation not available
    
 0.652
PBX1
LOW QUALITY PROTEIN: pre-B-cell leukemia transcription factor 1.
    
 0.652
PBX3
Pre-B-cell leukemia transcription factor 3.
    
 0.652
ENSSCAP00000022211
annotation not available
    
 0.652
HOXA7
Homeobox protein HoxA/B7.
   
  
0.636
HOXD4
Homeobox protein HoxA/B/C/D4.
   
 
0.588
HOXA6
Homeobox protein HoxA/B/C6.
   
  
0.556
ENSSCAP00000011931
Homeobox protein Hox-C9-like.
   
 
 0.521
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.