STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SATB2DNA-binding protein SATB2. (731 aa)    
Predicted Functional Partners:
EP300
Histone acetyltransferase p300.
    
 
 0.821
DOLK
Dolichol kinase.
      
 0.816
PCDH19
LOW QUALITY PROTEIN: protocadherin-19.
      
 0.815
CNTNAP2
Contactin associated protein-like 2.
   
  
 0.814
CACNA1C
Voltage-dependent L-type calcium channel subunit alpha-1C isoform X1.
      
 0.796
NEUROD6
Neurogenic differentiation factor 6.
   
  
 0.698
UBE2I
Ubiquitin-conjugating enzyme E2 I.
    
  0.631
CASP6
Caspase-6 isoform X2.
    
 0.604
CUX2
LOW QUALITY PROTEIN: homeobox protein cut-like 2.
    
 
 0.562
KCTD2
BTB/POZ domain-containing protein KCTD2/5/17.
    
  0.550
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.