STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SATB2DNA-binding protein SATB2. (731 aa)    
Predicted Functional Partners:
UBE2I
Ubiquitin-conjugating enzyme E2 I.
    
  0.695
CASP6
Caspase-6 isoform X2.
    
 0.662
CUX1
Homeobox protein cut-like 1 isoform X2.
    
 
 0.644
PIAS1
E3 SUMO-protein ligase PIAS1.
    
 0.635
CASP3
Caspase-3 isoform X1.
    
 0.610
FOXP2
Forkhead box P2.
    
 
 0.608
SUMO1
Small ubiquitin-related modifier 1.
    
 0.587
PAX6
Paired box protein Pax-6 isoform X1.
      
 0.579
FOXG1
Forkhead box G1.
      
 0.560
CUX2
LOW QUALITY PROTEIN: homeobox protein cut-like 2.
    
 
 0.549
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.