Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PARK7Protein/nucleic acid deglycase DJ-1. (189 aa)    
Predicted Functional Partners:
SNCA
Alpha-synuclein.
    
 
 0.971
ENSSCAP00000001787
annotation not available
    
 0.963
PRKN
E3 ubiquitin-protein ligase parkin isoform X2.
    
 0.963
PINK1
PTEN induced kinase 1.
    
 
 0.949
SOD3
Extracellular superoxide dismutase [Cu-Zn].
  
 0.891
SOD1
Superoxide dismutase 1.
  
 0.891
SOD2
Superoxide dismutase [Mn], mitochondrial isoform X1.
   
 0.833
HSPA4
Heat shock 70 kDa protein 4.
  
 0.800
TPI1
Triosephosphate isomerase 1.
  
 
 0.782
IDI1
Isopentenyl-diphosphate Delta-isomerase 1 isoform X3.
     
  0.735
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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