STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROGDIProtein rogdi homolog isoform X1. (286 aa)    
Predicted Functional Partners:
DMXL1
DmX-like protein 1 isoform X1.
    
 0.952
DMXL2
LOW QUALITY PROTEIN: dmX-like protein 2.
    
 0.949
SKP1
S-phase kinase-associated protein 1.
    
 0.938
ATP6V1E1
V-type H+-transporting ATPase subunit E.
    
 
 0.739
ATP6V1B1
ATPase H+ transporting V1 subunit B1.
   
 
 0.712
ZNHIT1
Zinc finger HIT domain-containing protein 1.
      
 0.619
SMYD4
SET and MYND domain-containing protein 4.
      
 0.595
ABHD11
Abhydrolase domain-containing protein 11.
      
 0.543
LANCL1
Glutathione S-transferase LANCL1.
      
 0.539
COPS7A
COP9 signalosome complex subunit 7a.
      
 0.534
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.