Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VPS13DVacuolar protein sorting-associated protein 13D isoform X1. (4389 aa)    
Predicted Functional Partners:
AKR7A2
Aflatoxin B1 aldehyde reductase member 2.
      
 0.756
KIAA2013
Uncharacterized protein KIAA2013 homolog.
      
 0.683
PRR16
Proline rich 16.
      
 0.683
IGSF21
Immunoglobulin superfamily member 21.
      
 0.638
ATG2B
Autophagy-related protein 2 homolog B isoform X1.
   
  
 0.626
PARK7
Protein/nucleic acid deglycase DJ-1.
      
 0.569
VPS13B
Vacuolar protein sorting-associated protein 13B isoform X2.
   
  
 0.556
MIGA2
Mitoguardin 2.
      
 0.543
C12orf65
Probable peptide chain release factor C12orf65 homolog, mitochondrial.
      
 0.530
ACBD5
Acyl-CoA-binding domain-containing protein 5 isoform X1.
      
 0.501
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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