STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCNN1GLOW QUALITY PROTEIN: amiloride-sensitive sodium channel subunit gamma. (573 aa)    
Predicted Functional Partners:
SCNN1B
Amiloride-sensitive sodium channel subunit beta.
  
0.989
SCNN1D
Amiloride-sensitive sodium channel subunit delta.
  
0.891
SCNN1A
Amiloride-sensitive sodium channel subunit alpha.
  
0.885
SCN2B
Voltage-gated sodium channel type II beta.
     
 0.834
SCN3B
Voltage-gated sodium channel type III beta.
     
 0.818
SCN8A
Voltage-gated sodium channel type VIII alpha.
     
 0.813
SCN4A
Sodium voltage-gated channel alpha subunit 4.
     
 0.813
SCN4B
Voltage-gated sodium channel type IV beta.
     
 0.812
CACNA1G
Voltage-dependent T-type calcium channel subunit alpha-1G isoform X14.
     
 0.705
CACNA1I
Voltage-dependent T-type calcium channel subunit alpha-1I.
     
 0.697
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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