Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN1Tetraspanin-1. (237 aa)    
Predicted Functional Partners:
TSPAN5
Tetraspanin-5.
      
 0.611
TSPAN14
Tetraspanin-14.
      
 0.594
TSPAN4
Tetraspanin-4 isoform X1.
      
 0.528
SNRPF
Small nuclear ribonucleoprotein F.
      
 0.528
PCDH1
Protocadherin-1 isoform X1.
     
 0.520
TM4SF1
Transmembrane 4 L6 family member 1.
      
 0.470
TSPAN13
Tetraspanin-13/31.
   
  
 0.444
RBM26
RNA-binding protein 26 isoform X2.
      
 0.443
TSPAN2
Tetraspanin-2 isoform X1.
      
 0.437
LOC103827264
Transmembrane 4 L6 family member 1-like.
      
 0.429
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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