STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGFBRAP1Transforming growth factor-beta receptor-associated protein 1. (863 aa)    
Predicted Functional Partners:
VPS18
Vacuolar protein sorting-associated protein 18 homolog.
   
 0.998
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.998
VPS11
Vacuolar protein sorting-associated protein 11 homolog isoform X1.
   
 0.998
VPS41
Vacuolar protein sorting-associated protein 41 homolog isoform X1.
   
 0.995
VPS8
Vacuolar protein sorting-associated protein 8 homolog isoform X1.
   
 0.978
VPS39
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.
    
 
0.968
VPS33A
Vacuolar protein sorting-associated protein 33A.
   
 0.967
VPS33B
Vacuolar protein sorting-associated protein 33B.
   
 0.945
CCZ1
Vacuolar fusion protein CCZ1 homolog.
    
 
 0.826
RAB9B
Ras-related protein Rab-9B isoform X1.
    
 
 0.822
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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