Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNCRIPHeterogeneous nuclear ribonucleoprotein Q isoform X1. (577 aa)    
Predicted Functional Partners:
ENSSCAP00000001280
annotation not available
   
 0.906
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.895
HNRNPD
Heterogeneous nuclear ribonucleoprotein A/B/D.
   
0.868
LOC103823413
Heterogeneous nuclear ribonucleoprotein K-like isoform X2.
   
 0.853
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.853
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L-like.
   
 0.849
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.843
ENSSCAP00000022714
annotation not available
   
 0.819
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.817
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B isoform X1.
   
 0.802
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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