STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RXRARetinoic acid receptor RXR-alpha isoform X1. (467 aa)    
Predicted Functional Partners:
PPARG
Peroxisome proliferator-activated receptor gamma.
    
0.972
PPARA
Peroxisome proliferator-activated receptor alpha isoform X1.
   
0.965
PPARD
Peroxisome proliferator-activated receptor delta isoform X2.
    
0.946
NR1H3
Oxysterols receptor LXR-alpha.
   
0.936
RXRG
Retinoic acid receptor RXR-gamma isoform X1.
  
  
 
0.901
NR1H4
Bile acid receptor isoform X2.
   
0.825
NCOR1
Nuclear receptor corepressor 1.
    
 0.811
NCOR2
Nuclear receptor corepressor 2.
    
 0.811
MED1
LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 1.
    
 0.798
NCOA2
Nuclear receptor coactivator 2.
   
 0.784
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.