STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT12TRNA wybutosine-synthesizing protein 2 homolog. (404 aa)    
Predicted Functional Partners:
TRMT112
Multifunctional methyltransferase subunit TRM112-like protein.
   
 
 0.946
LOC103820232
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1.
  
 
 0.780
TYW3
TRNA wybutosine-synthesizing protein 3 homolog.
  
 
 0.747
LCMT2
TRNA wybutosine-synthesizing protein 4 isoform X1.
   
  
 0.727
TRMT5
TRNA (guanine(37)-N1)-methyltransferase isoform X1.
      
0.676
TSR3
Ribosome biogenesis protein TSR3 homolog isoform X1.
   
  
 0.663
TRMT10A
TRNA methyltransferase 10 homolog A isoform X1.
   
  
 0.583
BUD23
Probable 18S rRNA (guanine-N(7))-methyltransferase.
   
 
 0.549
WDR4
TRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
  
 0.540
LCMT1
[phosphatase 2A protein]-leucine-carboxy methyltransferase.
   
  
 0.525
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.