STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000004238annotation not available (86 aa)    
Predicted Functional Partners:
COG8
Conserved oligomeric Golgi complex subunit 8.
   
 0.689
RIC1
RAB6A-GEF complex partner protein 1 isoform X1.
    
 0.646
COG6
Conserved oligomeric Golgi complex subunit 6 isoform X1.
    
 0.641
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1.
     
 0.627
VPS53
Vacuolar protein sorting-associated protein 53 homolog isoform X1.
     
 0.613
ARL1
ADP-ribosylation factor-like protein 1.
    
 0.612
VPS54
Vacuolar protein sorting-associated protein 54 isoform X1.
     
 0.559
VPS51
VPS51 subunit of GARP complex.
     
 0.552
IFT88
Intraflagellar transport protein 88 homolog isoform X1.
    
 0.550
ENSSCAP00000000063
ADP-ribosylation factor-like protein 3.
   
 0.548
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.