STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain-containing protein 6. (390 aa)    
Predicted Functional Partners:
PPP4C
Protein phosphatase 4 catalytic subunit.
    
 
 0.601
RET
Proto-oncogene tyrosine-protein kinase receptor Ret isoform X2.
      
 0.539
NCOA4
Nuclear receptor coactivator 4 isoform X1.
      
 0.537
ENSSCAP00000000236
annotation not available
    
 
 0.534
PDXDC1
Pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2.
      
 0.524
PPME1
Protein phosphatase methylesterase 1 isoform X1.
      
 0.517
SNRNP48
U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2.
      
 0.515
ENSSCAP00000021882
Serine/threonine-protein phosphatase 4 catalytic subunit-like.
    
 
 0.507
PPP4R1
Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X1.
    
 
 0.478
LOC103818746
Serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1.
    
 
 0.478
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.