STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP48Ubiquitin carboxyl-terminal hydrolase 48 isoform X1. (1097 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X4.
   
 
 0.891
NUP188
Nuclear pore complex protein Nup188.
    
   0.841
TRAF1
TNF receptor-associated factor 1 isoform X2.
    
 0.836
TRAF2
TNF receptor-associated factor 2 isoform X1.
    
 0.836
UBAC1
UBA domain containing 1.
    
   0.826
RNF123
Ring finger protein 123.
    
   0.753
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.697
DYNC1LI1
Cytoplasmic dynein 1 light intermediate chain 1.
    
 
 0.671
GPS1
COP9 signalosome complex subunit 1.
    
   0.639
TRAF5
TNF receptor-associated factor 5 isoform X1.
    
 0.637
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.