Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TPBGTrophoblast glycoprotein. (474 aa)    
Predicted Functional Partners:
LRRC3
Leucine-rich repeat-containing protein 3.
    
 0.622
ENSSCAP00000005425
annotation not available
    
 0.571
SFRP2
Secreted frizzled-related protein 2.
    
 0.530
LAMP5
Lysosome-associated membrane glycoprotein 5.
    
 
 0.528
TSKU
Tsukushi (leucine-rich repeat-containing protein 54).
      
 0.524
NTNG1
Netrin G1.
    
 0.510
ENSSCAP00000001414
LOW QUALITY PROTEIN: dynein regulatory complex protein 10-like.
    
 
 0.501
PPP2R2C
Protein phosphatase 2, regulatory subunit B, gamma isoform X2.
    
 0.470
ATP10B
Probable phospholipid-transporting ATPase VB.
    
 0.436
MITF
Melanocyte inducing transcription factor.
      
 0.434
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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