Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RRP8LOW QUALITY PROTEIN: ribosomal RNA-processing protein 8. (124 aa)    
Predicted Functional Partners:
SIRT1
NAD-dependent protein deacetylase sirtuin-1 isoform X2.
    
 0.948
RPF2
Ribosome production factor 2 homolog.
   
   0.941
CEBPZ
CCAAT/enhancer-binding protein zeta.
   
   0.930
RBM34
RNA-binding protein 34.
   
   0.919
BYSL
Bystin like.
   
 
 0.917
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.910
FTSJ3
Pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3.
   
 
 0.903
PUM3
Pumilio homology domain family member 6.
   
 
 0.900
NOL12
Ribosomal RNA-processing protein 17.
   
   0.894
DDX27
Probable ATP-dependent RNA helicase DDX27 isoform X1.
   
 
 0.882
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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