Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSSCAP00000004635ADP-ribosylation factor-like protein 8B. (247 aa)    
Predicted Functional Partners:
PLEKHM1
Pleckstrin homology domain-containing family M member 1 isoform X1.
    
 
 0.763
ITSN2
Intersectin-2 isoform X1.
    
 0.567
ENSSCAP00000003167
annotation not available
   
 0.556
RAB7A
Ras-related protein Rab-7A.
   
 0.556
TMEM192
Transmembrane protein 192.
    
 0.518
RAB2A
Ras-related protein Rab-2A.
   
 
 0.516
RUBCN
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X5.
    
 0.502
TRPM2
Transient receptor potential cation channel subfamily M member 2 isoform X1.
   
 
 0.493
LAMTOR2
Ragulator complex protein LAMTOR2 isoform X1.
    
 0.467
RAB28
Ras-related protein Rab-28 isoform X2.
   
 0.455
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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