IRF2BP2 protein (Serinus canaria) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IRF2BP2

Interferon regulatory factor 2 binding protein 2. (400 aa)

Predicted Functional Partners:

VGLL4

0.746

IRF2

0.657

RRP15

0.474

XPO7

0.461

Your Current Organism:

Serinus canaria

NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IRF2	IRF2BP2	ENSSCAP00000013412	ENSSCAP00000004790	Interferon regulatory factor 2 isoform X2.	Interferon regulatory factor 2 binding protein 2.	0.657
IRF2BP2	IRF2	ENSSCAP00000004790	ENSSCAP00000013412	Interferon regulatory factor 2 binding protein 2.	Interferon regulatory factor 2 isoform X2.	0.657
IRF2BP2	RRP15	ENSSCAP00000004790	ENSSCAP00000007391	Interferon regulatory factor 2 binding protein 2.	RRP15-like protein.	0.474
IRF2BP2	VGLL4	ENSSCAP00000004790	ENSSCAP00000015175	Interferon regulatory factor 2 binding protein 2.	Transcription cofactor vestigial-like protein 4.	0.746
IRF2BP2	XPO7	ENSSCAP00000004790	ENSSCAP00000016014	Interferon regulatory factor 2 binding protein 2.	Exportin-7.	0.461
RRP15	IRF2BP2	ENSSCAP00000007391	ENSSCAP00000004790	RRP15-like protein.	Interferon regulatory factor 2 binding protein 2.	0.474
VGLL4	IRF2BP2	ENSSCAP00000015175	ENSSCAP00000004790	Transcription cofactor vestigial-like protein 4.	Interferon regulatory factor 2 binding protein 2.	0.746
XPO7	IRF2BP2	ENSSCAP00000016014	ENSSCAP00000004790	Exportin-7.	Interferon regulatory factor 2 binding protein 2.	0.461