STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCBTRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase). (505 aa)    
Predicted Functional Partners:
C2orf49
Ashwin.
    
 0.988
DDX1
ATP-dependent RNA helicase DDX1.
   
 0.985
ZBTB8OS
Protein archease.
  
 0.978
RTRAF
RNA transcription, translation and transport factor protein.
   
 0.967
FAM98B
LOW QUALITY PROTEIN: protein FAM98B.
    
 0.966
FAM98A
Protein FAM98A.
    
 0.895
RTCA
RNA 3'-terminal phosphate cyclase (ATP).
  
  
 0.825
EIF2S1
Eukaryotic translation initiation factor 2 subunit 1.
   
  
 0.730
EIF1AX
Eukaryotic translation initiation factor 1A, X-chromosomal.
      
 0.683
MRPL58
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
  
  
 0.676
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.