Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSCAP00000004904annotation not available (381 aa)    
Predicted Functional Partners:
LSM5
U6 snRNA-associated Sm-like protein LSm5.
   
 0.962
LSM6
U6 snRNA-associated Sm-like protein LSm6.
   
 0.958
LSM8
LSM8 homolog, U6 small nuclear RNA associated isoform X1.
   
 0.947
LSM7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.947
LSM4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.940
LSM1
U6 snRNA-associated Sm-like protein LSm1.
   
 0.939
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.933
SNRPE
Small nuclear ribonucleoprotein E.
   
 0.899
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.892
DCP2
M7GpppN-mRNA hydrolase isoform X1.
    
 0.887
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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