STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD5Programmed cell death protein 5 isoform X2. (141 aa)    
Predicted Functional Partners:
SNRPE
Small nuclear ribonucleoprotein E.
   
    0.881
RPS11
Small subunit ribosomal protein S11e.
   
    0.872
RPL23
Large subunit ribosomal protein L23e.
   
  
 0.776
RPL35
Large subunit ribosomal protein L35e.
   
    0.769
RPS3
Small subunit ribosomal protein S3e.
   
    0.762
RPS23
Small subunit ribosomal protein S23e.
   
    0.761
RPL34
Large subunit ribosomal protein L34e.
   
    0.760
RPS4X
40S ribosomal protein S4, X isoform.
   
    0.747
RPL23A
Large subunit ribosomal protein L23Ae.
   
    0.746
PFDN1
Prefoldin subunit 1.
   
    0.746
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.