STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP13Matrix metalloproteinase-13 (collagenase 3). (472 aa)    
Predicted Functional Partners:
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.888
TIMP3
Metalloproteinase inhibitor 3.
   
 0.709
DCN
Decorin.
   
 0.659
CTSL
Cathepsin L1.
   
 
 0.614
MMP7
Matrix metalloproteinase-7 (matrilysin, uterine).
  
0.602
MMP16
Matrix metalloproteinase-16 (membrane-inserted).
  
0.584
LOC103820555
Plasminogen-like isoform X1.
   
 0.583
LOC103821638
Plasminogen-like isoform X1.
   
 0.583
MMP9
Matrix metalloproteinase-9 (gelatinase B).
   
0.582
CTSK
Cathepsin K.
   
 
 0.571
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.