STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NSUN5Probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1. (425 aa)    
Predicted Functional Partners:
TPR
Nucleoprotein TPR isoform X3.
    
   0.835
NOC4L
U3 small nucleolar RNA-associated protein 19.
   
 
 0.824
NSUN6
Putative methyltransferase NSUN6.
   
 
 0.783
PES1
Pescadillo ribosomal biogenesis factor 1.
   
   0.736
NSUN4
5-methylcytosine rRNA methyltransferase NSUN4.
   
  
 0.728
NSUN3
TRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial.
   
  
 0.723
NSUN2
NOP2/Sun RNA methyltransferase 2.
   
  
 0.720
GTF2IRD1
General transcription factor II-I repeat domain-containing protein 1 isoform X1.
      
 0.691
BUD23
Probable 18S rRNA (guanine-N(7))-methyltransferase.
   
  
 0.680
NOP14
Nucleolar protein 14.
   
 
 0.678
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.