STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MATN2Matrilin-2 isoform X1. (1262 aa)    
Predicted Functional Partners:
FZD6
Frizzled 6.
    
 
 0.660
NIPAL2
NIPA like domain containing 2.
      
 0.511
LUM
Lumican.
   
 0.508
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.479
DKK1
Dickkopf WNT signaling pathway inhibitor 1.
   
 
 0.478
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.466
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
    
 0.453
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.431
SPATA17
Spermatogenesis associated 17.
   
 
 0.420
DCN
Decorin.
   
 0.407
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.