STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103820225E3 ubiquitin-protein ligase TRIM39-like. (402 aa)    
Predicted Functional Partners:
LOC103814481
Inducible T-cell costimulator-like.
   
 0.623
SQSTM1
Sequestosome-1 isoform X1.
    
 0.566
DDX41
Probable ATP-dependent RNA helicase DDX41.
    
 0.560
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.522
EVPL
Envoplakin.
    
 0.480
PPL
Periplakin.
    
 0.480
UBE2N
Ubiquitin-conjugating enzyme E2 N.
    
 0.460
MAVS
Mitochondrial antiviral-signaling protein.
   
 0.454
PTEN
annotation not available
    
  0.449
LOC103812565
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like isoform X2.
    
  0.449
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.