STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDGFDPlatelet derived growth factor C/D. (335 aa)    
Predicted Functional Partners:
PDGFB
Platelet-derived growth factor subunit B.
     
 0.978
PDGFC
Platelet derived growth factor C/D.
     
0.978
PDGFRB
Platelet-derived growth factor receptor beta.
    
 0.969
PDGFRA
Platelet-derived growth factor receptor alpha isoform X1.
    
 0.968
PDGFA
Platelet-derived growth factor subunit A.
     
 0.962
VEGFD
Vascular endothelial growth factor C/D.
     
 0.922
VEGFC
Vascular endothelial growth factor C isoform X1.
     
 0.915
HGF
Hepatocyte growth factor isoform X1.
     
 0.913
EGF
Pro-epidermal growth factor isoform X1.
    
 0.907
EGFR
Epidermal growth factor receptor isoform X3.
     
 0.901
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.