Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRD1Bromodomain-containing protein 1 isoform X2. (1186 aa)    
Predicted Functional Partners:
MEAF6
Smad nuclear-interacting protein 1.
   
 0.984
BRPF3
Bromodomain and PHD finger-containing protein 3.
  
0.968
KAT7
Lysine acetyltransferase 7.
   
 0.948
ING4
Inhibitor of growth protein 4.
    
 0.942
KAT6B
Lysine acetyltransferase 6B.
   
 0.912
KAT6A
Histone acetyltransferase KAT6A.
   
 0.912
TCF20
Transcription factor 20 isoform X1.
   
 
 0.785
ING5
Inhibitor of growth protein 5 isoform X2.
    
 0.772
ATAD5
ATPase family AAA domain-containing protein 5.
   
 
 0.736
CHKA
Choline kinase alpha isoform X3.
      
 0.701
Your Current Organism:
Serinus canaria
NCBI taxonomy Id: 9135
Other names: Atlantic canary, Canario raza, Common canary, S. canaria, Serinus canarius, canary
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